Online Resources from Dr. Skolnick's group
Publication supplementary data
- Library of 15000 compact homopolypeptides
- Structure modeling of 907 G protein-coupled receptors in human genome
- Implementation of TASSER on 1489 representative PDB benchmark proteins
- Protein structure prediction of E. Coli Genome by TASSER Method
- CASP6 Results
- AFT - Automated Functional Templates for Enzyme Active Site Prediction.
- Dimer template library
- Parameters of the force field of the Side-Chain-Only model Data files for "Dynamics and thermodynamics of b-hairpin assembly: Insight from various simulation techniques."
- Residue-based Protein-Protein Interfacial Pair Potentials
- Apo/Holo and Holo/Holo protein pairs.
- Benchmarking of all-atom potentials for protein model refinement
- Apo/Holo and Holo/Holo protein pairs.
- FINDSITE benchmark dataset
- Q-Dock: low-resolution ligand docking
- DBD-Hunter and DBD-Threader datasets
- Predicted server ranking in CASP8
- Preliminary assessment of function prediction by Site-Hunter in CASP8
Services
- TM-score calculation
- Calculation of structural alignment using TM-align
- Comparative modeling using TASSER-Lite
- DNA-binding protein domain prediciton (from tertiary structure) DBD-Hunter
- DNA-binding protein domain prediciton (from sequence) DBD-Threader
- DNA-protein docking complex prediction (from tertiary structure) DP-dock
- Protein Enzyme Function prediction using EFICAz
- Reannotation of Enzyme Function by EFICAz on
245 genomes
Software
- TASSERLite software distribution for Linux
- PULCHRA program to all-atom reconstruction from C-alpha only
- Fr-TMalign program for structural alignment