#### Statistical Pair Potential for DNA-Protein Interactions #### Dervied from 179 crystal structures of DNA-Protein complexes #### #### Mu Gao and Jeffrey Skolnick #### #### Reference: #### DBD-Hunter: a knowledge-based method for the prediction of DNA-protein interactions. #### Nucleic Acids Res. 2008 36:3978-92. #### #### Apr 2008 #### A.IM A.PP A.PY A.SU C.PP C.PY C.SU G.IM G.PP G.PY G.SU T.PP T.PY T.SU GLY 1.781 -0.133 1.034 0.128 -0.309 0.460 -0.006 1.035 -0.481 0.593 -0.249 -0.133 0.315 -0.196 ALA 1.976 0.618 1.401 0.806 0.209 1.176 0.537 1.818 0.060 1.413 0.337 0.166 0.389 0.562 SER 0.848 -0.560 1.093 -0.265 -0.500 0.465 -0.360 0.347 -0.733 0.839 -0.439 -0.779 -0.424 -0.424 CYS 1.804 0.705 1.111 1.111 0.499 1.058 1.751 2.444 0.142 1.751 0.835 0.194 0.300 0.888 VAL 2.102 0.464 1.409 0.752 0.529 1.430 0.663 2.609 -0.082 2.049 0.663 0.219 0.647 0.957 THR 1.081 -0.589 1.020 -0.290 -0.490 0.112 -0.260 0.623 -0.763 1.093 -0.642 -0.917 -0.395 -0.762 ILE 1.663 0.299 2.115 0.564 0.607 1.175 0.830 2.216 0.001 1.443 0.425 0.299 1.288 0.883 PRO 1.712 0.439 0.824 0.613 0.139 1.813 0.560 1.408 0.204 1.813 0.204 0.047 0.522 0.290 MET 1.482 0.923 0.923 0.471 -0.128 0.513 0.251 1.717 0.331 0.870 0.043 0.161 0.566 0.566 ASP 2.082 0.738 1.794 0.695 0.183 0.014 0.266 1.336 -0.091 0.931 0.324 0.983 1.040 1.928 ASN -0.152 -0.413 -0.461 -0.309 -0.544 -0.529 -0.362 0.008 -0.617 -0.205 -0.603 -0.550 -0.709 -0.492 LEU 3.110 1.164 1.931 1.238 0.806 2.141 1.148 2.652 0.593 2.246 1.185 0.913 1.030 1.361 LYS 0.995 -0.961 0.079 -0.729 -1.068 -0.225 -0.608 -0.290 -1.105 -0.601 -0.631 -1.066 -0.004 -0.556 GLU 2.441 1.188 2.153 1.460 0.884 0.330 1.184 2.570 0.746 1.983 1.184 1.054 1.141 1.748 GLN 0.355 -0.177 0.186 -0.199 -0.479 -0.115 -0.444 0.072 -0.273 -0.139 -0.208 -0.241 -0.038 0.125 ARG -0.215 -1.064 -1.091 -1.305 -1.275 -1.299 -1.059 -1.270 -1.457 -1.472 -1.256 -1.318 -1.356 -1.305 HIS 0.942 -0.690 0.654 0.048 -0.379 -0.440 -0.348 -0.348 -0.785 -0.551 -0.315 -0.690 -0.228 -0.119 PHE 1.701 0.212 1.567 0.702 0.193 1.196 0.416 1.196 0.193 0.821 0.227 -0.067 0.651 0.351 TYR 0.785 -0.477 1.191 -0.357 -0.653 -0.273 -0.584 0.263 -0.686 0.445 -0.653 -0.496 -0.268 -0.438 TRP 1.553 -0.121 1.042 0.706 -0.733 0.520 -0.291 0.000 -0.345 1.906 0.114 -0.606 0.860 0.087