Georgia Institute of TechnologyCenter for the study of systems biology
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Dr. Shashi B. Pandit

Postdoctoral Fellow

shashi
Shashi B. Pandit

    Contact information:
  • Center for the Study of Systems Biology
  • Skolnick Lab
  • Tel:(404) 407-8985
  • Fax:(404) 385-7478
  • Email:spandit3@mail.gatech.edu

Research Interests

  • Protein structure prediction.
  • Comparative modeling using TASSER.

Selected list of publications:

[1] O. Krishnadev, V. S. Gowri, S. Balaji, N. Srinivasan and S. B. Pandit (2005) SUPFAM. Nucleic Acids Res. (On-line web publication http://www3.oup.co.uk/nar/database/summary/219).
[2] O., Krishnadev, N. Rekha, , S. B. Pandit, S. Abhiman, S. Mohanty, L. Swapna, S., Gore, and N. Srinivasan, (2005) PRODOC: a resource for the comparison of tethered protein domain architectures with in-built information on remotely related domain families. Nucleic Acids Res., 33 (Web Server issue):W126-129.
[3] R. Bhadra., N. Srinivasan., and S. B. Pandit (2005) A new domain family in the superfamily of alkaline phosphatase. In Silico Biol. 5, 0034.
[4] S. B. Pandit, Y. Zhang and J. Skolnick. TASSER-Lite: An automated tool for protein comparative modeling. Biophysical Journal 2006:91: 4180-4190.
[5] Z. Ding, H. Wang, X. Liang, E. Morris, F. Gallazzi, S. B. Pandit, J. Skolnick, J. C. Walker, and S. R. Van Doren. Phosphoprotein and Phosphopeptide Interactions with the FHA Domain from Kinase-Associated Protein Phosphatase. Biochemistry (in press).
[6] H. Zhou, S. B. Pandit, S. Lee, J. Borreguerro, H. Chen, L. Wroblewska and J. Skolnick. Analysis of TASSER based CASP7 protein structure prediction results. Proteins (in press).