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Submitted
In Press
2014
2013
Skolnick, J, Gao M.  2013.  Interplay of physics and evolution in the likely origin of protein biochemical function. Proceedings of the National Academy of Sciences. 110(23):9344-9349. PDF
Ando, T, Skolnick J.  2013.  Importance of excluded volume and hydrodynamic interactions on macromolecular diffusion in vivo. International Conference of the Quantum Bio-Informatics IV. 30:378-387.
2012
Hammes, GG, Skolnick J.  2012.  Biography of Harold A. Scheraga. The Journal of Physical Chemistry B. 116(23):6572-6572. PDF
Hammes, GG, Skolnick J.  2012.  Career Accomplishments of Harold A. Scheraga. The Journal of Physical Chemistry B. 116(23):6569-6571. PDF
Zhou, H, Skolnick J.  2012.  Template-based protein structure modeling using TASSERVMT. Proteins: Structure, Function, and Bioinformatics. 80(2):352-361. PDF
2011
Gao, M, Skolnick J.  2011.  New benchmark metrics for protein-protein docking methods. Proteins: Structure, Function, and Bioinformatics. 79(5):1623-1634. PDF
Skolnick, J, Friesner R.  2011.  Editorial overview. Current Opinion in Structural Biology. 21:147-149. PDF
Ando, T, Skolnick J.  2011.  Brownian dynamics simulation of macromolecule diffusion in a protocell. Proceedings of the International Conference of the Quantum Bio-Informatics IV. 28:413-426. PDF
Guan, W, Ozakin A, Gray A, Borreguero J, Pandit S, Jagielska A, Wroblewska L, Skolnick J.  2011.  Learning Protein Folding Energy Functions. 2011 IEEE 11th International Conference on Data Mining (ICDM)2011 IEEE 11th International Conference on Data Mining. :1062-1067. PDF
2010
Ando, T, Skolnick J.  2010.  Crowding and hydrodynamic interactions likely dominate in vivo macromolecular motion. Proceedings of the National Academy of Sciences of the United States of America. 107:18457-18462. PDF Supplementary Data
Gao, M, Skolnick J.  2010.  Structural space of protein-protein interfaces is degenerate, close to complete, and highly connected. Proceedings of the National Academy of Sciences of the United States of America. 107(52):22517-22. PDF Supplementary Data Abstract
Pandit, S B, Zhou H, Skolnick J.  2010.  TASSER-based protein structure prediction. Introduction to Protein Structure Prediction: Methods and Algorithms. 14:219-242. PDF
2009
Skolnick, J, Brylinski M.  2009.  Novel computational approaches to drug discovery. Proceedings of the International Conference of the Quantum Bio-Informatics III. PDF
Skolnick, J, Arakaki AK, Lee SY, Brylinski M.  2009.  The continuity of protein structure space is an intrinsic property of proteins. Proceedings of the National Academy of Sciences of the United States of America. 106(37):15690-5. PDF Abstract