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Kihara, D, Lu H, Kolinski A, Skolnick J.  2001.  TOUCHSTONE: an ab initio protein structure prediction method that uses threading-based tertiary restraints. Proceedings of the National Academy of Sciences of the United States of America. 98(18):10125-30. PDF Abstract
Skolnick, J, Kolinski A.  2001.  Computational studies of protein folding. Computing in Science & Engineering. 3:22-31. PDF
Kolinski, A, Rotkiewicz P, Ilkowski B, Skolnick J.  2000.  Protein Folding: Flexible Lattice Models. Progress of Theoretical Physics Supplement. 138:292-300. PDF
Fetrow, JS, Siew N, Skolnick J.  1999.  Structure-based functional motif identifies a potential disulfide oxidoreductase active site in the serine/threonine protein phosphatase-1 subfamily. The FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 13(13):1866-74. PDF Abstract
Kolinski, A, Godzik A, Skolnick J.  1999.  Contact Maps. Encyclopedia of Molecular Biology. :567-571. PDF
Skolnick, J, Fetrow JS, Ortiz AR, Kolinski A.  1999.  The role of computational biology in the genomics revolution. National Research Council’s Chemical Sciences Roundtable Workshop on the Impact of Advances in Computing and Communications Technologies on Chemical Sciences and Technology. PDF