Supplementary Information for DBD-Hunter

Publication Reference

  • M. Gao and J. Skolnick. 2008. DBD-Hunter: A knowledge-based method for the prediction of DNA-protein interactions. Nucleic Acids Research, 36(12): 3978-3992.

On-line service

  • DBD-Hunter (DNA-binding prediction from protein structure)

Benchmark Datasets

  • DB179 (DNA-binding proteins)
  • NB3797 (Non-DNA-binding proteins)
  • APO-HOLO 104 (DNA-binding proteins in DNA-free and DNA-bound forms)
  • SG1697 (Structural genomics targets)

Statistical Pair Potential

Supplementary Document

Related Works

  • DBD-Threader (DNA-binding prediction from protein sequence)
  • DP-dock (DNA-binding site/pose prediction based on protein/DNA docking)